BDI-pathogens / phyloscanner

Phylogenetics between and within hosts at once, all along the genome.
GNU General Public License v3.0
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Installing phyloflows #69

Closed mmaninetti closed 1 year ago

mmaninetti commented 1 year ago

Good morning,

I am trying to install phyloflows on R, and I am encountering some problems. I have tried both to install it from github, and to download the folder and install it on R locally, but I always get the same problem: *** installing help indices converting help for package 'phyloflows' finding HTML links ... done source.attribution.mcmc html
Errore: C:/Users/dalma/AppData/Local/Temp/RtmpemQqU6/Rbuild583424ec3766/phyloflows/man/source.attribution.mcmc.Rd:70: Bad \link text Can I please ask if you have any idea of how I can make it work? Thank you really much

olli0601 commented 1 year ago

Hi @mmaninetti

Uh that s weird. Try from the command line using R CMD INSTALL --no-docs?

@XiaoyueXI you are probably the best person to help here.

Best wishes, olli

XiaoyueXI commented 1 year ago

Hello both, I tried to install phyloflows from git on a mac laptop just now where phyloflows was never installed. And it seems to be successful. I do not have a windows machine to try. But I will message @mmaninetti to discuss this further.

mmaninetti commented 1 year ago

Dear Olli,

Thanks for the suggestion. I had already tried R cmd install, I will try it again later.

Best regards, Marco Maninetti

Il lun 7 nov 2022, 11:45 Oliver @.***> ha scritto:

Hi @mmaninetti https://github.com/mmaninetti

Uh that s weird. Try from the command line using R CMD INSTALL --no-docs?

@XiaoyueXI https://github.com/XiaoyueXI you are probably the best person to help here.

Best wishes, olli

— Reply to this email directly, view it on GitHub https://github.com/BDI-pathogens/phyloscanner/issues/69#issuecomment-1305419631, or unsubscribe https://github.com/notifications/unsubscribe-auth/AZBCINPFJDNYSLVPW4J6SKDWHDMUDANCNFSM6AAAAAART6Y3ZE . You are receiving this because you were mentioned.Message ID: @.***>

XiaoyueXI commented 1 year ago

issues solved