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BDI-pathogens
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phyloscanner
Phylogenetics between and within hosts at once, all along the genome.
GNU General Public License v3.0
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Merging tidyscanner branch to make 1.5.0
#29
mdhall272
closed
6 years ago
0
Problem with running second script
#28
MarcNiebel
closed
6 years ago
9
Make error message less opaque if the .bai file is missing
#27
mdhall272
closed
5 years ago
1
Problem when using explore window width option
#26
MarcNiebel
closed
6 years ago
4
Problem with first part of phyloscanner script
#25
MarcNiebel
closed
6 years ago
10
Problems with blacklisting
#24
MarcNiebel
closed
6 years ago
3
Problem with running analysis script
#23
MarcNiebel
closed
6 years ago
2
Merge of new version of phyloscanner_analyse_trees.R
#22
mdhall272
closed
6 years ago
0
Merge of phyloscannerR version with the main repository
#21
mdhall272
closed
6 years ago
0
Speed up MergeSimilarStrings with threshold of zero...
#20
ChrisHIV
closed
6 years ago
1
Make the consensus files an option
#19
ChrisHIV
opened
7 years ago
1
Don't call RAxML with fewer than four seqs
#18
ChrisHIV
closed
6 years ago
0
missing trailing newline...
#17
ChrisHIV
closed
6 years ago
0
Add --ignore-duplicates option
#16
ChrisHIV
opened
7 years ago
0
Improve the display of how it was called
#15
ChrisHIV
opened
7 years ago
0
EstimateReadCountPerWindow.py IndexError
#14
damientully
closed
7 years ago
4
Error: length(lims) == 2 is not TRUE
#13
antoine4ucsd
closed
7 years ago
5
Issue running analyse trees
#12
KELEONUCSF
closed
6 years ago
16
Unexpected attribute properties for pysam.AlignedSegment
#11
damientully
closed
7 years ago
4
TypeError: object of type 'NoneType' has no len()
#10
damientully
closed
7 years ago
4
Run raxml with --flag-check
#9
ChrisHIV
closed
7 years ago
0
Clarify 'no reads in window' warning
#8
ChrisHIV
closed
7 years ago
0
Contact people awaiting release
#7
ChrisHIV
closed
7 years ago
0
Make CRAM an alternative input to BAM?
#6
ChrisHIV
closed
5 years ago
0
some dually windows and some not: error
#5
ChrisHIV
closed
7 years ago
2
Opaque SummaryStatistics.R error message
#4
ChrisHIV
closed
7 years ago
1
Window coord selection error?
#3
olli0601
closed
8 years ago
2
NameError: global name 'AllSeqsToPrint' is not defined
#2
olli0601
closed
8 years ago
1
IndexError?
#1
olli0601
closed
8 years ago
1
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