search

BIMSBbioinfo / pigx_rnaseq

Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
GNU General Public License v3.0
21 stars 12 forks source link

Use of Salmon leads to non-deterministic reports #17

Open rekado opened 6 years ago

rekado commented 6 years ago

Salmon output depends on random numbers. The random number generator seeds cannot be set by the user:

https://github.com/COMBINE-lab/salmon/issues/185

Kallisto would be a viable alternative as it does allow users to set the seed, but it is missing a feature that Salmon provides:

https://github.com/pachterlab/kallisto/issues/154
borauyar commented 6 years ago

Use of Salmon leads to non-deterministic reports