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BIRSBiointegration / Hackathon

Multi-omics studies are available here
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seqFISH dropbox folder not available #12

Closed drighelli closed 3 years ago

drighelli commented 3 years ago

Hi,

I noticed that the link to the dropbox folder with the seqFISH data is not available anymore... Is there any other link?

Thanks!

aljabadi commented 3 years ago

I think it's best to make sure that the data are packages up soon and hosted on Bioconductor so that issues such as this would not occur.

drighelli commented 3 years ago

Hi Al, @aljabadi

indeed the dataset has been loaded in the SingleCellMultiModal package, but we need the place where we downloaded the dataset to cite it in the package and in the paper...

Also, the dropbox folder contained the data preprocessing steps that would be good to briefly describe somewhere.

mixOmicsTeam commented 3 years ago

Hi Dario, The updated link for upload is now: https://cloudstor.aarnet.edu.au/plus/s/ZuBIXuzuvc9JMj3 Regards, Kim-Anh

A/Prof. Kim-Anh Lê Cao NHMRC Career Development Fellow School of Mathematics and Statistics, Melbourne Integrative Genomics Bld 184 | The University of Melbourne T: +61 (0)3834 43971 | http://mixomics.org @.***Omics_team | http://lecao-lab.science.unimelb.edu.au/

On 30 Apr 2021, at 17:32, dario righelli @.**@.>> wrote:

Hi Al, @aljabadihttps://github.com/aljabadi

indeed the dataset has been loaded in the SingleCellMultiModal package, but we need the place where we downloaded the dataset to cite it in the package and in the paper...

Also, the dropbox folder contained the data preprocessing steps that would be good to briefly describe somewhere.

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aljabadi commented 3 years ago

Hi Dario @drighelli,

That makes sense. Please do let me know once the data are available via the SCMM package so we can update the vignettes.

drighelli commented 3 years ago

Hi Kim-Anh @mixOmicsTeam,

thanks for the link!

@aljabadi it is already available see the vignette here

Best, Dario

p.s. you can find also the scNMT data from this workshop available in the same package.