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BU-ISCIII
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buisciii-tools
set of helper tools for bu-isciii management of its core services portfolio.
GNU General Public License v3.0
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Updated several templates
#295
victor5lm
closed
4 hours ago
0
Added files to remove for viralrecon service in services.json
#294
jaimeozaez
closed
3 days ago
0
Fixed error because items can be none, empty list, or list with content
#293
svarona
closed
4 days ago
0
Create a script for getting stats from outbreak services
#292
jaimeozaez
opened
1 week ago
0
amrfinderplus implementation with singularity instead of conda
#291
Shettland
closed
1 week ago
0
Addition of amrfinderplus to characterization template
#290
jaimeozaez
closed
1 week ago
2
Bioinfo-doc does not apply new-lines when creating the e-main notes
#289
svarona
opened
1 week ago
0
Allowed for multiple service handling and fixed in_progress update
#288
svarona
closed
1 week ago
0
Updated pipelines paths where necessary
#287
victor5lm
closed
1 week ago
0
Include AMRFinderPlus in Characterization template
#286
Shettland
closed
2 days ago
1
Add a check stage before setting "in progress" services when new-service is executed
#285
jaimeozaez
closed
1 week ago
0
Fixed snippy and characterization templates
#284
jaimeozaez
closed
3 weeks ago
0
Update to nf-core/bacass v2.3.0 and Adjust Paths
#283
Daniel-VM
opened
3 weeks ago
0
Fixed singularity-images path when updating pangolin database in lablog_viralrecon.
#282
jaimeozaez
closed
3 weeks ago
0
Fixed autoclean-sftp function
#281
jaimeozaez
closed
3 weeks ago
0
Fixed clean module
#280
jaimeozaez
closed
4 weeks ago
0
Actions changes to force python lint to success if no .py files are in PR
#279
Shettland
closed
4 weeks ago
0
Extenison file (csv to tsv) in lablog_viralrecon_results to match pikavirus table
#278
juanledesma78
closed
4 weeks ago
0
Updated sarek version where needed
#277
victor5lm
closed
4 weeks ago
0
Removed ad hoc path for wkhtmlpdf and better catching error
#276
saramonzon
closed
4 weeks ago
0
Remove absolute path for wkhtmltopdf executable
#275
saramonzon
closed
1 month ago
0
Added --dev option
#274
saramonzon
closed
1 month ago
0
Included annotated tab description in exome-trios markdowns
#273
Shettland
closed
1 month ago
0
Modified all templates so that singularity images are used
#272
victor5lm
closed
1 month ago
0
Template issues
#271
saramonzon
closed
1 month ago
0
Creation of MTBseq lablog_results
#270
jaimeozaez
closed
1 month ago
0
Check path where nexflow downloads the needed singularity images
#269
jaimeozaez
closed
1 month ago
1
Develop
#268
jaimeozaez
closed
1 month ago
0
Updated multiqc version for viralrecon template
#267
Shettland
closed
1 month ago
0
Modified all templates so that singularity images are used instead of conda envs or loaded modules
#266
victor5lm
closed
1 month ago
2
Created RESULTS/lablog files where needed to include multiqc_report.html
#265
victor5lm
closed
2 weeks ago
2
Automation of the configuration process prior to the execution of viralrecon services.
#264
jaimeozaez
closed
1 month ago
4
Changed scratch-copy default queue in configuration.json
#263
victor5lm
closed
1 month ago
0
Implement --dev flag to prevent email notifications during testing phases
#262
Daniel-VM
closed
1 month ago
0
Fixed exomiser-html-description image and markdown locations
#261
Shettland
closed
2 months ago
0
Updated results lablog and files in clean in sarek templates
#260
Shettland
closed
2 months ago
1
Modified bioinfo_doc.py so that new lines are applied when creating the .pdf file
#259
victor5lm
closed
1 week ago
0
Fixes in archive module and plasmidID docs
#258
saramonzon
closed
2 months ago
0
Updated services.json
#257
victor5lm
closed
2 months ago
0
Included documentation for IRMA
#256
Shettland
closed
2 months ago
0
Added wgmlst_chewbbaca report and results markdowns
#255
svarona
closed
2 months ago
0
Updated services.json
#254
victor5lm
closed
2 months ago
0
Updated lablog results filenames where necessary
#253
victor5lm
closed
2 months ago
0
Include Multiqc_report.html in RESULTS folder for every service
#252
Shettland
closed
2 weeks ago
0
Update CHANGELOG.md
#251
victor5lm
closed
2 months ago
0
Add markdown of assembly results folder
#250
victor5lm
closed
2 months ago
0
Complete documentation for sarek services (exomeeb, exometrio, wgstrio)
#249
Shettland
closed
2 months ago
0
Updated pipeline documentation and results for mRNAseq
#248
Daniel-VM
closed
2 months ago
1
Updated pipeline documentation and results for viralrecon, MAG and PikaVirus
#247
svarona
closed
2 months ago
0
Complete documentation for mRNAseq
#246
Daniel-VM
closed
2 months ago
0
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