is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
When opening a run stats in wetlab, the following error appears:
ValueError at /wetlab/displayRun=13926/
'Completed' is not in list
Request Method: GET
Request URL: http://iskylims.isciiides.es/wetlab/displayRun%3D13926/
Django Version: 4.2.7
Exception Type: ValueError
Exception Value:
'Completed' is not in list
Exception Location: /opt/iskylims/wetlab/utils/fetch_info.py, line 231, in graphics_state
Raised during: wetlab.views.display_run
Python Executable: /opt/iskylims/virtualenv/bin/python
Python Version: 3.9.6
Python Path:
['/opt/iskylims',
'/opt/python/3.9.6/lib/python39.zip',
'/opt/python/3.9.6/lib/python3.9',
'/opt/python/3.9.6/lib/python3.9/lib-dynload',
'/opt/iskylims/virtualenv/lib/python3.9/site-packages']
Server time: Tue, 20 Aug 2024 09:40:55 +0200
Traceback (most recent call last):
File "/opt/iskylims/virtualenv/lib/python3.9/site-packages/django/core/handlers/exception.py", line 55, in inner
response = get_response(request)
File "/opt/iskylims/virtualenv/lib/python3.9/site-packages/django/core/handlers/base.py", line 197, in _get_response
response = wrapped_callback(request, *callback_args, **callback_kwargs)
File "/opt/iskylims/virtualenv/lib/python3.9/site-packages/django/contrib/auth/decorators.py", line 23, in _wrapper_view
return view_func(request, *args, **kwargs)
File "/opt/iskylims/wetlab/views.py", line 1223, in display_run
r_data_display = wetlab.utils.fetch_info.get_information_run(run_name_found)
File "/opt/iskylims/wetlab/utils/fetch_info.py", line 719, in get_information_run
info_dict["graphic_value"], info_dict["graphic_color"] = graphics_state(run_state)
File "/opt/iskylims/wetlab/utils/fetch_info.py", line 231, in graphics_state
index = state_list.index(state)
Exception Type: ValueError at /wetlab/displayRun=13926/
Exception Value: 'Completed' is not in list
Local vars
Variable Value
g_color
['red', 'violet', 'pink', 'brown', 'orange', 'yellow', 'yellow', 'green', 'red']
g_value
[10, 15, 30, 45, 60, 75, 90, 100, 10]
state
'Completed'
state_list
['error',
'recorded',
'sample_sent',
'processing_run',
'processed_run',
'processing_bcl2fastq',
'processed_bcl2fastq',
'completed',
'cancelled']
Description of the bug
When opening a run stats in wetlab, the following error appears:
Command used and terminal output
No response
Relevant files
No response
System information
No response