is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
During the local installation of relecov-iskylims, an error occurs when uploading data to the iskylims database due to missing ontology mappings. Specifically, fields in the ontologymap table are absent in full installation mode, leading to failures in data synchronization between helper-tools and iskylims.
This issue can be resolved by providing the --tables parameter during the full installation of iskylims.
Daniel-VM
commented
5 days ago
Description of the bug
During the local installation of relecov-iskylims, an error occurs when uploading data to the iskylims database due to missing ontology mappings. Specifically, fields in the
ontologymaptable are absent in full installation mode, leading to failures in data synchronization between helper-tools and iskylims.This issue can be resolved by providing the
--tablesparameter during the full installation of iskylims.Command used and terminal output
No response
Relevant files
No response
System information
No response