Sorry just saw very similar closed issue, installed previous version and it worked fine. Please ignore/delete!
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I am following the RNA velocity tutorial and got stumped on the bustools capture part.
First of all, I think it is missing the -s flag and I am getting this error:
Error: capture list type must be specified (one of -s, -u, or -b)
Usage: bustools text [options] bus-files
Then I added the -s flag (hopefully that is correct).
bustools capture -o introns_capture/ -s -c introns_tx_to_capture.txt -e matrix.ec -t transcripts.txt output.correct.sort.bus
Parsing transcripts .. done
Parsing ECs .. done
Parsing capture list .. done
Read in 259019682 BUS records, wrote 95361447 BUS records
But then introns_capture is empty and does not contain the split.ec needed for bustools count.
Sorry just saw very similar closed issue, installed previous version and it worked fine. Please ignore/delete!
##################################################################### I am following the RNA velocity tutorial and got stumped on the bustools capture part.
First of all, I think it is missing the -s flag and I am getting this error:
Then I added the -s flag (hopefully that is correct).
But then introns_capture is empty and does not contain the split.ec needed for bustools count.
Please help me figure this out.