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BUStools
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bustools
Tools for working with BUS files
https://bustools.github.io/
BSD 2-Clause "Simplified" License
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Prediction
#59
Closed
johan-gson
closed
4 years ago
johan-gson
commented
4 years ago
Added UMI correction (similar to that of UMITools), command umicorrect on sorted bus data
extensions to count
can export copies per UMI Histograms (--hist)
supports downsampling (--downsample)
changes to fromtext
supports working on files - now requires -p to send output to stdout, uses same parameters as other commands for file output
now allows for comments in the text file, either # at start of a line, or
# at end of lines - useful for writing commented test cases
also moved text and fromtext to a separate cpp file
Added the command predict, which corrects the count matrix using prediction of unseen species from the CU histograms