BUStools / bustools

Tools for working with BUS files
https://bustools.github.io/
BSD 2-Clause "Simplified" License
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suggestion: bustools count should more gracefully handle if a transcript exists in transcripts.txt file but not in t2g file #94

Open Yenaled opened 1 year ago

Yenaled commented 1 year ago

Right now, it would infinite loop if the --umi-gene option is enabled (without --umi-gene, it would output a mtx file where an erroneous entry is given the value of 0). This also should be fixed in the kb_python unit test where there's a mismatch between transcripts.txt and transcripts_to_genes.txt.