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BauerLab / ngsane

Analysis Framework for Biological Data from High Throughput Experiments
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Better output for Smokebox differenceparser #27

Closed BauerLab closed 10 years ago

BauerLab commented 10 years ago

New format:

 
diff result/SummaryTOPHATCUFFHTSEQ.html result/expected/SummaryTOPHATCUFFHTSEQ.html | python bin/diffparser.py | head
Too different 2 vs 1 with context
< [1]Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8. 'The Sequence Alignment/Map format and SAMtools.'; Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup.
vs
> [2]Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8. 'The Sequence Alignment/Map format and SAMtools.'; Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup.
-----REST------
343c343
< # NGSANE /apps/gi/ngsane/0.4.0//mods/tophat 

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> # NGSANE /share/ClusterShare/software/contrib/fabbus/ngsane/dev1/mods/tophat 
368c368
...