how to get output figures

[sadiexiaoyu]

Problem

Hello, cell2location, I am running the code from https://cell2location.readthedocs.io/en/latest/notebooks/cell2location_tutorial.html But I cannot get any figure as the output file. Do I need additional code for plotting figures?

• [ ] I follow the instructions from the cell2location tutorial (using on scvi-tools).
• [ ] I have adjusted required hyperparameters to my dataset and tissue N_cells_per_location and detection_alpha.
• [ ] I have provided 10X reaction/inlet as batch_key for reference NB regression.
• [ ] I have checked Cell2location Community Forum, scvi-tools forum and did not find a solution

Description of the data input and hyperparameters

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Single cell reference data: number of cells, number of cell types, number of genes

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Single cell reference data: technology type (e.g. mix of 10X 3' and 5')

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Spatial data: number of locations numbers, technology type (e.g. Visium, ISS, Nanostring WTA)

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[vitkl]

@sadiexiaoyu

Can you please clarify what this means?

But I cannot get any figure as the output file.

[vitkl]

I am assuming that this is resolved.