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BayraktarLab / cell2location

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
https://cell2location.readthedocs.io/en/latest/
Apache License 2.0
321 stars 58 forks source link

pin package version #314

Open z5ouyang opened 1 year ago

z5ouyang commented 1 year ago

... Hi thanks for making this good tool free available!

Due to some of the dependency packages change, newly installed cell2location encountered error. Such as numba (0.57.1). After pin numb==0.56.4, cell2location import sucessfully.

If it is possible, pin the package version would be great. Or provide your working conda env yml. So use can verify the package version.

Thank you very much for consideration.

vitkl commented 1 year ago

Thanks for this suggestion. Let's see if this numba issue resolves itself within a few days/weeks - it could be a temporary problem.