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BenevolentAI / DeeplyTough

DeeplyTough: Learning Structural Comparison of Protein Binding Sites
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datasets_downloader.sh #18

Closed C0921 closed 2 years ago

C0921 commented 2 years ago

Hi, I ran into a tricky problem. When I run the command datasets_downloader.sh, it cannot download the full data. I hope someone can help me with this problem.

JoshuaMeyers commented 2 years ago

Hi @C0921, thanks for your interest in DeeplyTough, could you post the output you get when running the script? Cheers, J.

C0921 commented 2 years ago

When I run the command of Evaluation on ProSPECCTs, it shows: FileNotFoundError: [Errno 2] No such file or directory: '/DeeplyTough-master/datasets/prospeccts/identical_structures/identical_structures.csv'. But through the datasets_downloader.sh here I cannot download the name called identical_structures file.

JoshuaMeyers commented 2 years ago

Hey @C0921, apologies for the slow reply. The ProSPECCTs dataset had moved, I have updated the url. Can you confirm this now works for you? Thanks for highlighting the issue.

Fix is here https://github.com/BenevolentAI/DeeplyTough/commit/7536c5bb7d4e1e7e5d4f6cfacd1a437db03596e9