BergmannLab MONET issues

BergmannLab / MONET

MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236

GNU General Public License v3.0

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issues

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Error in output[[i]] : subscript out of bounds

#58 di-mendes opened 1 year ago
1
Hard-coded file paths

#57 FelixTheStudent opened 1 year ago
0
MONET.K1

#56 hadicharati opened 2 years ago
0
Single nodes in the cluster

#55 Jordi-V opened 2 years ago
4
maximum number of genes in cluster for K1

#54 jpinero opened 2 years ago
3
Positive and negative weights

#53 JoseAML closed 2 years ago
5
This should fix the "problem too large" error when the problem is not large.

#52 WeijiaZhang24 closed 2 years ago
0
R1 clustering in MONET dosent work

#51 Jordi-Valls opened 2 years ago
5
adding python 2 library versions and commenting on monet bash functio…

#50 samanfrm closed 2 years ago
0
Docker on Mac OS X: no "successfully built" line

#49 jjc2718 closed 2 years ago
4
K1: specify igraph version for Python 2 compatibility

#48 jjc2718 closed 2 years ago
0
Error: building k1-image

#47 ngerstner closed 2 years ago
2
Error in K1: change of pip's URL

#46 ewysocka opened 3 years ago
1
Error: docker not installed

#45 nebfield closed 3 years ago
3
ERROR: docker build returned an error

#44 ewysocka closed 3 years ago
3
ERROR with docker version: 20.10.1 on Ubuntu 20.04 LTS

#43 ewysocka closed 3 years ago
2
Error: file 'input.txt' not found

#42 abrantesas closed 3 years ago
2
K1 - disconnected nodes in a cluster

#41 ewysocka closed 3 years ago
5
Docker build returned an error

#40 XscapeCn closed 3 years ago
1
What does the --largest mean?

#39 hui-liu opened 3 years ago
1
M1 method not using --smallest parameter

#38 clescoat opened 4 years ago
1
fix K1 container image version

#37 Zolikazer closed 4 years ago
0
manual install

#36 gianfilippo closed 4 years ago
3
Cytoscape Input

#35 zebasilio opened 4 years ago
4
changed confidence level of output to 1.0

#34 mattiat closed 4 years ago
1
Issues 15

#33 mattiat closed 4 years ago
0
set numerical separator in result-modules output file to 1.0

#32 mattiat closed 4 years ago
9
Issues 20

#31 mattiat closed 4 years ago
0
fixed issues_20

#30 mattiat closed 4 years ago
0
Allow running Docker without sudo

#29 prihoda opened 4 years ago
4
moving platform specific tests

#28 mattiat closed 4 years ago
0
hiding sensitive directories and files

#27 mattiat closed 4 years ago
0
hide containers/src folers and monet executable

#26 mattiat closed 4 years ago
1
improve error message when R1 fails because of lack of RAM resources

#25 mattiat opened 4 years ago
0
K1: add number of clusters as command line parameter

#24 jjc2718 closed 4 years ago
1
reinstaller hangs

#23 mattiat closed 4 years ago
1
add a spinner when user is waiting

#22 mattiat opened 4 years ago
1
How to modify the target module number for K1？

#21 FenghuJi closed 4 years ago
2
R1 error on small input: subscript out of bounds

#20 mattiat closed 4 years ago
7
K1 error on small input: n_samples should be >= n_clusters

#19 mattiat closed 4 years ago
0
improve the README file

#18 mattiat closed 4 years ago
1
R1 parameters: improve help and documentation.

#17 mattiat closed 4 years ago
1
M1 implictly assumes networks with > 100 nodes

#16 sergio-gomez closed 4 years ago
2
R1 method using default parameters fail with error 'problem too large'

#15 cristian931 opened 4 years ago
10
K1 can fail without returning an error

#14 mattiat closed 4 years ago
1
adding a check to prevent monet from being invoked directly...

#13 mattiat closed 4 years ago
0
prevent execution of MONET's main script directly (i.e. without installation)

#12 mattiat closed 4 years ago
1
gene-level module membership score

#11 mattiat opened 4 years ago
4
Add parameters to M1

#10 sergio-gomez closed 4 years ago
0
Ctrl-C does not stop monet

#9 mattiat opened 4 years ago
5