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BinPro / CONCOCT

Clustering cONtigs with COverage and ComposiTion
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Python 2.7 requirement and scripts when installing from `conda` #305

Open vinisalazar opened 2 years ago

vinisalazar commented 2 years ago

Hi,

Thank you very much for providing this package. It is very useful.

I'm trying to install CONCOCT from Conda. When I do it, it installs it along with Python 2.7. I got the following message when try to create an environment with CONCOCT and Python 3:

Encountered problems while solving:
  - package concoct-0.4.0-gsl1.16_0 requires python 2.7*, but none of the providers can be installed

Does CONCOCT only support Python 2.7? If not, would you consider adding a Python 3 requirement to the Bioconda recipe?

Edit: also, I can't seem to have access to any of the scripts (e.g. cut_up_fasta.py when installing from Conda). Only the concoct subpackage is available at lib/python2.7/site-packages/concoct in the environment directory. Could this be a problem with the recipe?

Thank you for any assistance you can provide, Vini

vinisalazar commented 2 years ago

Update

The above happened on Mac OS. I tried an installation on Linux and it worked fine. Feel free to close if you wish.