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BioComputingUP / ring-pymol

This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
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plugin 4.0 for all atoms and binary associated #10

Open Alain-chavanieu opened 7 months ago

Alain-chavanieu commented 7 months ago

Hello Alessio,

Since few months now, I use the ring plugin to characterize some antibody_protein dynamics. Also, you sent to me the bin for ring and we use it on our linux station. (With 5000 frames and 400K atoms) It’s very useful. I wrote some scripts for glycan-glycan interactions as well to analyse directly the gfreq files. Now, I’ve seen the ring 4.0 is doing that. I tested today on your server with 45 frames. Well a bit tricky to obtain the good mpdb file from a charmm36_charmmGUI .xtc trajectory but ok we found a protocol for that.

Would it be possible to obtain the 4.0 plugin for pymol ? and may be the bin executable ? (i asked the bin wia the web page, no success)

Merci

alain

AlessioDelConte commented 7 months ago

Hi Alain,

We are getting back to you regarding the RING v4 binary. For the plugin, I will need some more time before publishing it, as I am currently working on other projects. I will keep this issue open so I can get back to you when it will be ready.

Thanks for your interest, Alessio

Alain-chavanieu commented 7 months ago

Hello

Many thanks for your mail and RING.

The contact map at residues level is great.

Here we script to have atom to atom hbond between sugar to AA to decipher a bit more.

Alain

From: Alessio Del Conte @.> Sent: Thursday, February 8, 2024 9:55 AM To: BioComputingUP/ring-pymol @.> Cc: Alain-chavanieu @.>; Author @.> Subject: Re: [BioComputingUP/ring-pymol] plugin 4.0 for all atoms and binary associated (Issue #10)

Hi Alain,

We are getting back to you regarding the RING v4 binary. For the plugin, I will need some more time before publishing it, as I am currently working on other projects. I will keep this issue open so I can get back to you when it will be ready.

Thanks for your interest, Alessio

— Reply to this email directly, view it on GitHub https://github.com/BioComputingUP/ring-pymol/issues/10#issuecomment-1933618815 , or unsubscribe https://github.com/notifications/unsubscribe-auth/AYV2FUVQNEXN55TFEYARMI3YSSHHFAVCNFSM6AAAAABC6EQRWWVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSMZTGYYTQOBRGU . You are receiving this because you authored the thread. https://github.com/notifications/beacon/AYV2FURA7S2BKRGDPRJUIU3YSSHHFA5CNFSM6AAAAABC6EQRWWWGG33NNVSW45C7OR4XAZNMJFZXG5LFINXW23LFNZ2KUY3PNVWWK3TUL5UWJTTTICXH6.gif Message ID: @. @.> >