REMP

[YinanZheng]

Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor

• Repository: https://github.com/YinanZheng/REMP

Confirm the following by editing each check box to '[x]'

• [x] I understand that by submitting my package to Bioconductor, the package source and all review commentary are visible to the general public.
• [x] I have read the Bioconductor Package Submission instructions. My package is consistent with the Bioconductor Package Guidelines.
• [x] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.
• [x] I am committed to the long-term maintenance of my package. This includes monitoring the support site for issues that users may have, subscribing to the bioc-devel mailing list to stay aware of developments in the Bioconductor community, responding promptly to requests for updates from the Core team in response to changes in R or underlying software.

I am familiar with the essential aspects of Bioconductor software management, including:

• [x] The 'devel' branch for new packages and features.
• [x] The stable 'release' branch, made available every six months, for bug fixes.
• [x] Bioconductor version control using Subversion (optionally via GitHub).

For help with submitting your package, please subscribe and post questions to the bioc-devel mailing list.

[mtmorgan]

It looks like you have addressed most / all of the issues in the original review; shall I take a second look at this package?

[YinanZheng]

Dear Martin,

Thanks for the reply! I will push another new version within the next hour for your second review. But I may still not be able to resolve the issues in Mac and Windows (" caught segfault address 0x7f8a4cb31de0, cause 'memory not mapped' " and "Failed to locate the 'texi2pdf' output file").

Thanks a lot!

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

ead6937 0.99.11

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the following build report for more details:

http://bioconductor.org/spb_reports/REMP_buildreport_20161209121242.html

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

119eaf1 0.99.12

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the following build report for more details:

http://bioconductor.org/spb_reports/REMP_buildreport_20161209125130.html

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

2563c6c 0.99.13

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the following build report for more details:

http://bioconductor.org/spb_reports/REMP_buildreport_20161209140658.html

[YinanZheng]

I have no further changes at this point.. but the build system gave me a wired build report.. Could you please take a second look?

Thanks!!

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

69eceaf 0.99.14

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the following build report for more details:

http://bioconductor.org/spb_reports/REMP_buildreport_20161213031637.html

[mtmorgan]

I've been trying to investigate the segfaults, which usually indicate significant problems. It seems like it does not come from your code, but from a dependency. I will continue to work on this until Monday, and if I have not made progress will proceed with processing your package.

[YinanZheng]

@mtmorgan Thank you so much!

[mtmorgan]

I would like to continue investigating the segfault; with progress by no later than January 3. Sorry for the delay.

[YinanZheng]

@mtmorgan No problem! I really appreciate it.

[YinanZheng]

Just wondering if there are any updates on this packages. Thanks!

[mtmorgan]

Sorry, one last go at debugging this later this week.

[YinanZheng]

Thanks!

Please let me know if there are any changes in the code I need to work on.

[mtmorgan]

Sorry, I have been unable to reproduce the segfault, and am accepting the package. It will be added to our nightly builds and devel repository. More details will be available in the next several days.

[YinanZheng]

Thanks a lot!