bioc-issue-bot
commented
2 years ago Hi @zslastman
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: Ribostan
Title: Estimates Isoform Specific RPF Footprint Densities
Version: 0.99.0
Authors@R:
person(given = "Dermot",
family = "Harentt",
role = c("aut", "cre"),
email = "dermot.harnett@mdc-berlin.de",
comment = c(github = "www.github.com/zslastman"))
Maintainers@R:
person(given = "Dermot",
family = "Harentt",
role = c("aut", "cre"),
email = "dermot.harnett@mdc-berlin.de",
comment = c(github = "www.github.com/zslastman"))
Description: Ribostan is a simple package which contains functionality related
to ribosomal footprint data and quantitative analysis thereof. It includes
functions to align A/P sites by maximizing including in the CDS, to produce
plots of KL divergence in 'metacodon' plots, and to estimate Ribosomal Footprint
densities in an isoform aware manner. It also provides functions for quantifying
periodicity of open reading frames, and identifying translated uORFs.
License: `use_mit_license()`, `use_gpl3_license()` or friends to
pick a license
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
VignetteBuilder: knitr
Config/testthat/edition: 3
biocViews: RiboSeq, Sequencing, QualityControl, DataImport, GenomeAnnotation,
Transcriptomics, Software, Coverage, RNASeq
Suggests:
here,
knitr,
rmarkdown,
BSgenome.Hsapiens.UCSC.hg38,
AnnotationHub,
BiocStyle,
Imports:
rtracklayer,
rstan,
Matrix,
ggplot2,
Rsamtools,
BiocGenerics,
Biostrings,
testthat,
GenomicFeatures,
GenomicAlignments,
GenomeInfoDb,
GenomicFiles,
GenomicRanges,
IRanges,
S4Vectors,
readr,
stringr,
dplyr,
multitaper,
tidyr,
magrittr,
ORFik,
broom,
tibble,
Depends:
R (>= 4.0.0)
vjcitn
zslastman
lshep
ococrook
ggvillamil
LiNk-NY
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