bioc-issue-bot
commented
1 year ago Hi @vjcitn
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The DESCRIPTION file for this package is:
Package: scviR
Date: 2022-10-01
Title: experimental inferface from R to scvi-tools
Version: 0.99.0
Authors@R:
c(person(
"Vincent", "Carey", role = c("aut", "cre"),
email = "stvjc@channing.harvard.edu",
comment = c(ORCID = "0000-0003-4046-0063")
)
)
Description: This package defines interfaces from R to scvi-tools. A
vignette works through the totalVI tutorial for analyzing CITE-seq
data. Another vignette compares outputs of Chapter 12 of the
OSCA book with analogous outputs based on totalVI quantifications.
Future work will address other components of scvi-tools, with a
focus on building understanding of probabilistic methods based
on variational autoencoders.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.2), basilisk, shiny, SingleCellExperiment
Imports: reticulate, BiocFileCache, utils, pheatmap,
SummarizedExperiment, S4Vectors, limma, scater
Suggests: knitr, testthat, reshape2, ggplot2, rhdf5
VignetteBuilder: knitr
biocViews: Infrastructure, SingleCell, DataImport
RoxygenNote: 7.2.3
URL: https://github.com/vjcitn/scviR
BugReports: https://github.com/vjcitn/scviR/issues
DarioS
vjcitn
lshep
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