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Bioconductor / GenomicDataCommons

Provide R access to the NCI Genomic Data Commons portal.
http://bioconductor.github.io/GenomicDataCommons/
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slicing HTTP410 error #114

Closed lmckinno closed 6 months ago

lmckinno commented 6 months ago

Hello,

I am trying to use the slicing() function. Running this example:

' slicing("df80679e-c4d3-487b-934c-fcc782e5d46e",

' regions="chr17:75000000-76000000",

' token=gdc_token())

Gives me the error: Error in .gdc_post(endpoint = sprintf("legacy/slicing/view/%s", uuid), : Gone (HTTP 410).

Is there any way to fix this? Thanks!

LiNk-NY commented 6 months ago

Hi @lmckinno

The legacy endpoint was deprecated by the GDC. https://github.com/Bioconductor/GenomicDataCommons/blob/devel/NEWS.md#new-features https://docs.gdc.cancer.gov/API/Release_Notes/API_Release_Notes/#v3280

Note. Please update your version of GenomicDataCommons