devel_mscore2: proFIA fails to byte-compile and prepare package for lazy loading

[sneumann]

Hi, in https://cloud.docker.com/u/bioconductor/repository/registry-1.docker.io/bioconductor/devel_mscore2/builds/d7a4ddb7-52ab-494a-b572-e88142c3d283

* installing *source* package ‘proFIA’ ...
** using staged installation
** libs
gcc -I"/usr/local/lib/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c FIABandsExtractionCentroid.c -o FIABandsExtractionCentroid.o
gcc -I"/usr/local/lib/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c UtilFunc.c -o UtilFunc.o
gcc -I"/usr/local/lib/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c fastMatchPpm.c -o fastMatchPpm.o
gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o proFIA.so FIABandsExtractionCentroid.o UtilFunc.o fastMatchPpm.o -L/usr/local/lib/R/lib -lR
installing to /usr/local/lib/R/site-library/00LOCK-proFIA/00new/proFIA/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Error in reconcilePropertiesAndPrototype(name, slots, prototype, superClasses,  : 
  The prototype for class “proFIAset” has undefined slot(s): 'fClasses'
Error: unable to load R code in package ‘proFIA’
Execution halted
ERROR: lazy loading failed for package ‘proFIA’
* removing ‘/usr/local/lib/R/site-library/proFIA’

There is no failure on http://bioconductor.org/checkResults/3.8/bioc-LATEST/proFIA/

[sneumann]

@ethevenot and adelabriere, any ideas ? This is holding up the Bioconductor metabolomics image. Yours, Steffen

[sneumann]

Closing here in favour of https://github.com/adelabriere/proFIA/issues/1