Open bioc-workshop-dev opened 1 month ago
/request id="sfe2024" title="Exploratory spatial data analysis from single molecules to multiple samples" description="This workshop showcases new features in SpatialFeatureExperiment and Voyager, including support for transcript spot geometries in rowGeometries, plotting transcript spots, aggregating transcript spots with a spatial grid or any geometry, aggregating cell level data with a spatial grid or any geometry, splitting SFE objects with geometries, and improved support for images and affine transformations" section="BIOC2024" startfile="vignettes/workshop.Rmd" source="https://github.com/lambdamoses/SFEWorkshop2024" docker="ghcr.io/lambdamoses/sfeworkshop2024:devel" pkglist="" vignettes=""
AUTO-GENERATED RESPONSE Your request has been received but is currently failing initial screening. Please retry your request ensuring all parameters are passed in correctly.
/request id="sfe2024" title="Exploratory spatial data analysis from single molecules to multiple samples" description="This workshop showcases new features in SpatialFeatureExperiment and Voyager, including support for transcript spot geometries in rowGeometries, plotting transcript spots, aggregating transcript spots with a spatial grid or any geometry, aggregating cell level data with a spatial grid or any geometry, splitting SFE objects with geometries, and improved support for images and affine transformations" section="Bioc2024" startfile="vignettes/workshop.Rmd" source="https://github.com/lambdamoses/SFEWorkshop2024" docker="ghcr.io/lambdamoses/sfeworkshop2024:devel" pkglist="" vignettes=""
AUTO-GENERATED RESPONSE Your request has been received but is currently failing initial screening. Please retry your request ensuring all parameters are passed in correctly.
/request id="sfe2024" title="Exploratory spatial data analysis from single molecules to multiple samples" description="This workshop showcases new features in SpatialFeatureExperiment and Voyager, including support for transcript spot geometries in rowGeometries, plotting transcript spots, aggregating transcript spots with a spatial grid or any geometry, aggregating cell level data with a spatial grid or any geometry, splitting SFE objects with geometries, and improved support for images and affine transformations" section="Bioc2024" startfile="vignettes/workshop.Rmd" source="https://github.com/lambdamoses/SFEWorkshop2024" docker="ghcr.io/lambdamoses/sfeworkshop2024:devel"
AUTO-GENERATED RESPONSE Your request has been received but is currently failing initial screening. Please retry your request ensuring all parameters are passed in correctly.
/request id="sfe2024" title="Exploratory spatial data analysis from single molecules to multiple samples" description="This workshop showcases new features in SpatialFeatureExperiment and Voyager, including support for transcript spot geometries in rowGeometries, plotting transcript spots, aggregating transcript spots with a spatial grid or any geometry, aggregating cell level data with a spatial grid or any geometry, splitting SFE objects with geometries, and improved support for images and affine transformations" section="Bioc2024" startfile="vignettes/workshop.Rmd" source="lambdamoses/SFEWorkshop2024" docker="ghcr.io/lambdamoses/sfeworkshop2024:devel"
AUTO-GENERATED RESPONSE Your request has been received but is currently failing initial screening. Please retry your request ensuring all parameters are passed in correctly.
/request id="sfe2024" title="Exploratory spatial data analysis from single molecules to multiple samples" description="This workshop showcases new features in SpatialFeatureExperiment and Voyager, including support for transcript spot geometries in rowGeometries, plotting transcript spots, aggregating transcript spots with a spatial grid or any geometry, aggregating cell level data with a spatial grid or any geometry, splitting SFE objects with geometries, and improved support for images and affine transformations" section="Bioc2024" startfile="vignettes/workshop.Rmd" source="lambdamoses/SFEWorkshop2024" docker="ghcr.io/lambdamoses/sfeworkshop2024:latest"
AUTO-GENERATED RESPONSE Your request has been received and has passed initial screening. :sparkles:
Below are the detected values:
id='sfe2024'
title='Exploratory spatial data analysis from single molecules to multiple samples'
description='This workshop showcases new features in SpatialFeatureExperiment and Voyager, including support for transcript spot geometries in rowGeometries, plotting transcript spots, aggregating transcript spots with a spatial grid or any geometry, aggregating cell level data with a spatial grid or any geometry, splitting SFE objects with geometries, and improved support for images and affine transformations'
section='Bioc2024'
source='lambdamoses/SFEWorkshop2024'
docker='ghcr.io/lambdamoses/sfeworkshop2024:latest'
port='8787'
command='echo "setwd(\"/home/rstudio\"); setHook(\"rstudio.sessionInit\", function(newSession) { if (newSession) rstudioapi::filesPaneNavigate(getwd()) }, action = \"append\")" > /home/rstudio/.Rprofile; /init'
pkglist=''
vignettes=''
If these are as expected, no further action is needed at this time. Please wait for an admin's response. If any changes are needed, please re-run the /request action with desired values.
/test id="sfebioc2024" title="Exploratory spatial data analysis from single molecules to multiple samples" description="Using SpatialFeatureExperiment and Voyager with support for transcript spot geometries in rowGeometries, plotting transcript spots, aggregating transcript spots with a spatial grid or any geometry, aggregating cell level data with a spatial grid or any geometry, splitting SFE objects with geometries, and improved support for images and affine transformations" section="BioC2024" startfile="vignettes/workshop.Rmd" source="https://github.com/lambdamoses/SFEWorkshop2024" docker="ghcr.io/lambdamoses/sfeworkshop2024:latest"
AUTO-GENERATED RESPONSE Action Log Your request has passed initial checks and is being built and/or deployed to the test instance. Please wait further updates.
AUTO-GENERATED RESPONSE Action Log Your workshop has been successfully deployed to the test instance. :sparkles: Please test your workshop on the development instance and notify us via comment when you deem it ready for public consumption on the production instance.
The code works on the test instance and is ready for production, though I will continue to edit the text. What's the deadline to finalize everything?
You can make changes up until tomorrow afternoon ET time. Tomorrow when I land in Michigan, around 2 PM local time, I will freeze everything as I will be scaling up all the extra nodes, and caching all the containers on all the nodes
DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT. PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW COMMENT
General Notes
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Note. The example
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is on multiple lines for readability.Additional Workshop Information
Expected Number of Participants: 0
Workshop Date(s): July 24, 2024 - July 22, 2024
Workshop Start Time (approx.): 11:00