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BiomedSciAI
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fuse-med-ml
A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)
Apache License 2.0
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multiple validation dataloaders in common lightning module
#321
mosheraboh
closed
1 year ago
0
Poriya Checkpointing Aid
#320
SagiPolaczek
closed
8 months ago
3
Refactoring: `.flake8` & `.mypy.ini` -> `setup.cfg`
#319
SagiPolaczek
closed
1 year ago
0
cleaning and reorganizing fuse core code on segmentation
#318
itaijj
closed
1 year ago
0
Shaked fuse
#317
shakedpe
closed
1 year ago
0
`TestCrossAttentionTransformerEncoder` randomly fails
#316
SagiPolaczek
opened
1 year ago
0
small fix. more intuitive condition for main process run
#315
alex-golts
closed
1 year ago
0
update resnet with pool option, added contrastive supervised loss
#314
shakedpe
closed
1 year ago
0
Prep for long train
#313
mosheraboh
closed
1 year ago
0
Fix ISIC's ResNet run (Poriya)
#312
SagiPolaczek
closed
1 year ago
0
add a flag to metric to avoid multigpu collection
#311
mosheraboh
closed
1 year ago
1
new picai seg
#310
itaijj
closed
1 year ago
0
Resnet3d bug fix
#309
itaijj
closed
1 year ago
0
resnet 3d with first channels dim != 64 bugfix
#308
itaijj
closed
1 year ago
0
bug in resnet3d following latest change
#307
itaijj
closed
1 year ago
2
Picai detection
#306
itaijj
closed
1 year ago
2
make components more general
#305
mosheraboh
closed
1 year ago
0
`mypy` typing fix
#304
SagiPolaczek
closed
1 year ago
0
Integrate `isort`
#303
SagiPolaczek
closed
8 months ago
1
added an op to replace elements of value X with value Y - supporting numpy array, torch tensors, lists, and strings
#302
YoelShoshan
closed
1 year ago
2
Support Lightning >=2.0.0 and Pandas >=2.0.0
#301
SagiPolaczek
closed
1 year ago
2
fixed num_available_cores to work correctly in distributed setting in LSF (using cores affinity)
#300
YoelShoshan
closed
1 year ago
0
Shatz batch sampler
#299
shatz01
closed
1 year ago
1
cindex: make pred np.array to allow negation
#298
michalozeryflato
closed
1 year ago
1
add postprocess to lostDefault
#297
itaijj
closed
1 year ago
0
multiprocessing improvements
#296
YoelShoshan
closed
1 year ago
0
backbone resnet and resnet 3d - better pretrained support
#295
mosheraboh
opened
1 year ago
0
Support for pl2 in simple mnist example
#294
shatz01
closed
1 year ago
0
add backbone mvit
#293
liamhazan
closed
1 year ago
1
Support pytorch lightning 2.0.0
#292
mosheraboh
closed
1 year ago
0
few fixes to enable pl2 - and limit pl version until all tests will …
#291
mosheraboh
closed
1 year ago
1
Failure in running mutliple GPUs with dp strategy for ehr_transformer
#290
ellabarkan
opened
1 year ago
1
Make logging optional
#289
shatz01
closed
1 year ago
0
perplexity impl + post collect func process fix
#288
mosheraboh
closed
1 year ago
0
🧹 Integrate `nb-clean`
#287
SagiPolaczek
closed
1 year ago
0
added ability to ignore kwargs in function string descriptor building logic, and solved an issue in run_multiprocessed in verbose=0 case
#286
YoelShoshan
closed
1 year ago
0
Adding participation in PyTorch Ecosystem to Readme
#285
simona-rc
closed
1 year ago
0
Caching should only be done on rank 0
#284
shatz01
opened
1 year ago
1
Mention in readme that FuseMedML is part of PyTorch ecosystem
#283
mosheraboh
closed
1 year ago
0
Yoels
#282
YoelShoshan
closed
1 year ago
0
Pl model save + export the entire dataset (all keys) to dataframe
#281
mosheraboh
closed
1 year ago
1
Update hello_world.ipynb
#280
alex-golts
closed
1 year ago
0
Update hello_world.ipynb example
#278
simona-rc
closed
1 year ago
3
make examples subpackage (fuse_examples)
#277
mosheraboh
closed
1 year ago
4
remove examples. prefix
#276
alex-golts
closed
1 year ago
0
Fixes for the Hello World notebook
#275
SagiPolaczek
closed
1 year ago
0
made knight datamodule for DDP support
#274
shatz01
opened
1 year ago
0
NDict API change - missing pre-existing features
#273
avihu111
closed
1 year ago
2
Display CI output on Jenkins' console while building
#272
SagiPolaczek
opened
1 year ago
0
`NDict` optimization
#271
SagiPolaczek
closed
1 year ago
1
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