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Public Workflows at GNPS
https://gnps.ucsd.edu/
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[FBMN] Jobs getting stuck? #871

Closed siwook-hwang closed 4 months ago

siwook-hwang commented 4 months ago

I had a lot of problem getting FBMN to work so I downloaded the example data provided (MZMine version). When I upload those data, FBMN still seems to get stuck. Run_dereplicator seems to be the bottleneck. Previous job of the same parameter got stuck at a similar point... Perhaps I am being too impatient?

Screenshot of the progress:

image

Job link: https://proteomics2.ucsd.edu/ProteoSAFe/status.jsp?task=8fee5db732214bd094eb8ca9f5d1e7a9

Also my personal data is experiencing a similar thing: https://proteomics2.ucsd.edu/ProteoSAFe/status.jsp?task=c7ae63e9f384404f9bf7b117d0349cfc

Thank you in advance!

mwang87 commented 4 months ago

I'd suggest trying GNPS2 quickstart for FBMN:

https://quickstart2.gnps2.org/FBMN_quickstart