CDCgov / phoenix

🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
Apache License 2.0
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handle failed samples via filtering #147

Open slsevilla opened 4 months ago

slsevilla commented 4 months ago

** Description Pipeline currently uses summary files created to determine if there is a sample failure. Instead will switch to filtering the tuple to allow for pipeline logging/resume to not be reliant on file generation

** Modules/Workflows affected