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COMBINE-lab / salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
https://combine-lab.github.io/salmon
GNU General Public License v3.0
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Error reading from the FASTA/Q stream. Minimum return code for left and right read was (-2). #941

Open Hanjiangna opened 4 months ago

Hanjiangna commented 4 months ago

Dear developer Error reading from the FASTA/Q stream. Minimum return code for left and right read was (-2). code salmon quant -i $IndexDir -p 15 -l A -1 ${CleanDataDir}/${treat}${CleanReads1Suffix} -2 ${CleanDataDir}/${treat}${CleanReads2Suffix} -o ${outDir}/${treat}

How should I go about solving this error or investigating its cause?

Best wishes!