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CONABIO / antares3

Madmex with open data cube and in python3
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error in fiona._env: Unable to open during segmentation #57

Closed ixime closed 5 years ago

ixime commented 5 years ago

During segmentation with antares segment errors appear in the workers like the following:

2019-02-26 16:18:26,393 - fiona._env - collection __init__: Unable to open /shared_volume/temp/segmentation_results/39cbab_sentinel_2_25_-33_2017.shp or /shared_volume/temp/segmentation_results/39cbab_sentinel_2_25_-33_2017.SHP.
2019-02-26 16:18:26,393 - fiona._env - collection __init__: Failed to open file /shared_volume/temp/segmentation_results/39cbab_sentinel_2_25_-33_2017.shp.It may be corrupt or read-only file accessed in update mode.
2019-02-26 16:18:27,838 - fiona._env - collection __init__: Unable to open /shared_volume/temp/segmentation_results/efe77b_sentinel_2_22_-30_2017.shp or /shared_volume/temp/segmentation_results/efe77b_sentinel_2_22_-30_2017.SHP.
2019-02-26 16:18:27,838 - fiona._env - collection __init__: Failed to open file /shared_volume/temp/segmentation_results/efe77b_sentinel_2_22_-30_2017.shp.It may be corrupt or read-only file accessed in update mode.
distributed.core - INFO - Event loop was unresponsive in Worker for 4.21s.  This is often caused by long-running GIL-holding functions or moving large chunks of data. This can cause timeouts and instability.

We checked some of them and they are in the bucket and their paths are in the db.

palmoreck commented 5 years ago

issue solved?

palmoreck commented 5 years ago

@ixime do we still have that errors?