Use local paths relative to work

COSIMA / mom6-panan

Pan-Antarctic regional configuration of MOM6

MIT License

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Use local paths relative to work #6

Closed aidanheerdegen closed 3 years ago

aidanheerdegen commented 3 years ago

The data_table uses full system paths: https://github.com/COSIMA/mom6-panan/blob/master/data_table#L1-L16 like /g/data/ua8/JRA55-do/RYF/v1-3/RYF.slp.1990_1991.nc

These files will not be captured by the manifest system.

Instead /g/data/ua8/JRA55-do/RYF/v1-3/ should be added as an input source in config.yaml and the paths changed to a path relative to the ephemeral work directory, e.g. work/INPUT/RYF.slp.1990_1991.nc

aidanheerdegen commented 3 years ago

This is incorrect, the path should not include work. @AndyHoggANU has already changed this in his working branch, so I'll close this.