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CSOgroup / CALDER

MIT License
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Genome #4

Open Nuturetree opened 2 years ago

Nuturetree commented 2 years ago

Hi author I want know how can i using other genome (eg: cotton) thanks Nuturetree

Nuturetree commented 2 years ago

I find you call “TxDb.Hsapiens.UCSC.hg19.knownGene.rds” as genome, if the file from gtf file?

YuanlongLiu commented 2 years ago

Hi,

It is from https://bioconductor.org/packages/release/data/annotation/html/TxDb.Hsapiens.UCSC.hg19.knownGene.html

Including other genomes is under development. I can send you a trial version if you want.

Best, Y.L

On Tue, May 17, 2022 at 2:45 AM Nuturetree @.***> wrote:

I find you call “TxDb.Hsapiens.UCSC.hg19.knownGene.rds” as genome, if the file from gtf file?

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Nuturetree commented 2 years ago

Hi author: The CALDER is a useful tool. I would very much like to be able to use it properly. Thank you for your answer. Can this training version help me to identify the subcompartment structure of species other than humans? Best, Nuturetree

YuanlongLiu commented 2 years ago

Have a check of CALDER2.0, added support for other genomes