Closed dosumis closed 3 months ago
MVP:
Write Makefile that:
Run OBASK,
Next steps:
Challenges:
Reconciling/linking gene & protein IDs. These may come in as PRO, uniprot, ensembl + we need to record species. Decision to make: aim for unified gene nodes that collect IDs? (ID label pairs?)
Pipeline will generate rdf-owl files by running Pandasaurus_CxG across CellXGene datasets accessed via CxG census.
Configuration of labelsets will come from:
Some work to extend pandsaurus_cxg may be needed
TBD: should we be storing cell ID lists?