Dependency updates (upgrade to newest spatialdata & spatialdata_io versions)
Notebook updates
CRISPR targeting efficiency calculation for isoforms (cases where perturbation condition != target gene) and distinguish target gene missing from .var_names versus zero-division error (GEX in perturbed > reference group)
spatialdata&spatialdata_ioversions).var_namesversus zero-division error (GEX in perturbed > reference group)corescpy.tl.write_ome_tifNote: Cropping issues in newer environment: Jira issue here