Thank you for creating this pipeline. I've installed all the necessary components and I'm currently attempting a test run to demultiplex a single pool of 10X multiome data, which includes four multiplexed patients. Despite providing the VCF file with imputed SNPs, I encountered the following error message:
Dry run
Using profile config/ for setting default command line arguments.
Building DAG of jobs...
MissingInputException in rule vireo in file /omics/groups/OE0130/internal/Mislav/AML_multiome_Freiburg/CellDemux/CellDemux/dmx.smk, line 637:
Missing input files for rule vireo:
output: /omics/groups/OE0130/internal/Mislav/AML_multiome_Freiburg/CellDemux/resultsPool2/rna/vireo/donor_ids.tsv
wildcards: sample=Pool2
affected files:
/omics/groups/OE0130/internal/Mislav/AML_multiome_Freiburg/CellDemux/resultsPool2/inputfiles/refvcf.vcf
Thank you for creating this pipeline. I've installed all the necessary components and I'm currently attempting a test run to demultiplex a single pool of 10X multiome data, which includes four multiplexed patients. Despite providing the VCF file with imputed SNPs, I encountered the following error message:
Dry run Using profile config/ for setting default command line arguments. Building DAG of jobs... MissingInputException in rule vireo in file /omics/groups/OE0130/internal/Mislav/AML_multiome_Freiburg/CellDemux/CellDemux/dmx.smk, line 637: Missing input files for rule vireo: output: /omics/groups/OE0130/internal/Mislav/AML_multiome_Freiburg/CellDemux/resultsPool2/rna/vireo/donor_ids.tsv wildcards: sample=Pool2 affected files: /omics/groups/OE0130/internal/Mislav/AML_multiome_Freiburg/CellDemux/resultsPool2/inputfiles/refvcf.vcf