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ClinGen / gene-and-variant-curation-tools

ClinGen's gene and variant curation interfaces (GCI & VCI). Developed by Stanford ClinGen team.
https://curation.clinicalgenome.org/
MIT License
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Auto-fill in disease terms from CSpec in VCI #136

Open cgpreston opened 2 years ago

cgpreston commented 2 years ago

This is the highest priority feature left out of #77 .

Is summarized by slide 10 in the mockups here

Summary of features needed (prioritized by desired release order), these could be released independently:

  1. If the chosen CSpec has only one MONDO ID, pre-fill the MONDO term in the disease modal.
  2. If the chosen CSpec has multiple MONDO IDs, display the disease term table with all MONDOs from the CSpec.
  3. Enable curators to select one of the MONDO IDs from the table and have it populate the MONDO term field.
  4. Also show any MONDO IDs associated with the gene from the GCI in the table.
markmandell commented 1 year ago

Pre-populating disease should be a guided experience (after saving Cspec Doc, continue to disease modal, prepopulate disease options from document)

If theres already an existing disease not included in CSpec doc or no disease, direct user/continue to Disease modal. If there is an existing disease, still guiding user, add some warning text regarding existence of disease info within CSpec

liammulh commented 1 year ago

Does this require further specification, @markmandell, @cgpreston?

wrightmw commented 1 year ago

@liammulh yes, a little. Put it on hold until Christine gets back.