Clinical-Genomics chanjo issues

Clinical-Genomics / chanjo

Chanjo provides a better way to analyze coverage data in clinical sequencing.

https://clinical-genomics.github.io/chanjo/

MIT License

49 stars 12 forks source link

issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

customized coverage report give back "0/0 " transcipt for a gene present in the panel

#260 4WGH opened 2 weeks ago
16
Patch release 4.7.1

#259 northwestwitch closed 3 months ago
1
add(cryptography)

#258 ChrOertlin closed 3 months ago
2
Minor release 4.7

#257 northwestwitch closed 3 months ago
1
Rename main branch to `main`

#256 dnil opened 3 months ago
0
Replace alchy with sqlservice and unfreeze SQLAlchemy

#255 northwestwitch closed 3 months ago
3
Updated GitHub actions

#254 northwestwitch closed 4 months ago
0
Replace ruamel.yaml with pyyaml

#253 northwestwitch closed 4 months ago
0
Unfreeze SQLAlchemy

#252 dnil closed 3 months ago
5
Replace deprecated Alchy with SQLAlchemy

#251 northwestwitch closed 3 months ago
2
Fix broken badges and link on readme page

#250 northwestwitch closed 11 months ago
1
Broken badges on README page

#249 northwestwitch closed 11 months ago
0
Bump ipython from 7.13.0 to 8.10.0

#248 dependabot[bot] opened 1 year ago
0
Bump certifi from 2020.4.5.1 to 2022.12.7

#247 dependabot[bot] opened 1 year ago
0
Update DEPLOYMENT.md

#246 henrikstranneheim closed 1 year ago
1
Extend Docker setup in README

#245 northwestwitch closed 1 year ago
1
Fix brew removed from Ubuntu path

#244 northwestwitch closed 1 year ago
0
Update DEPLOYMENT

#243 henrikstranneheim closed 1 year ago
8
Added info on docker setup to README

#242 mhkc closed 1 year ago
2
Bump joblib from 0.14.1 to 1.2.0

#241 dependabot[bot] opened 1 year ago
0
maximum recursion depth exceeded when loading a sample

#240 mhkc closed 1 year ago
11
Bump mkdocs from 1.1 to 1.2.3

#239 dependabot[bot] opened 2 years ago
0
Bump nltk from 3.5 to 3.6.6

#238 dependabot[bot] opened 2 years ago
0
Bump ipython from 7.13.0 to 7.16.3

#237 dependabot[bot] closed 1 year ago
1
Fix query to avoid "GROUP BY clause; this is incompatible with sql_mode=only_full_group_by" error

#236 northwestwitch opened 2 years ago
0
PyPI publish && mkdocs deploy actions

#235 northwestwitch closed 3 years ago
2
Create a github action to push repo to pypi when a new release is created

#234 northwestwitch closed 3 years ago
0
Fix report crash by freezing SQLAlchemy and doclinks fix

#233 northwestwitch closed 3 years ago
5
AttributeError: 'scoped_session' object has no attribute 'engine' when trying to visualize report in browser

#232 northwestwitch closed 3 years ago
1
Dead link to documentation in README

#231 mhkc closed 3 years ago
1
Bump urllib3 from 1.25.9 to 1.26.5

#230 dependabot[bot] opened 3 years ago
0
Bump py from 1.8.1 to 1.10.0

#229 dependabot[bot] opened 3 years ago
0
Bump pygments from 2.6.1 to 2.7.4

#228 dependabot[bot] opened 3 years ago
0
Bump pyyaml from 5.3.1 to 5.4

#227 dependabot[bot] opened 3 years ago
0
Bump jinja2 from 2.11.2 to 2.11.3

#226 dependabot[bot] opened 3 years ago
0
Time to update transcripts

#225 47KW opened 3 years ago
9
Version 4.6

#224 northwestwitch closed 3 years ago
0
Created docker-compose and Makefile

#223 northwestwitch closed 3 years ago
3
pymysql lib missing when using the container in docker-compose

#222 northwestwitch closed 3 years ago
2
Version 4.5.1

#221 northwestwitch closed 3 years ago
2
Release 4.5

#220 northwestwitch closed 3 years ago
6
Github actions for pytest & coveralls and for building and pushing to Docker Hub

#219 northwestwitch closed 3 years ago
5
Chanjo Dockerfile

#218 northwestwitch closed 3 years ago
8
Move to Docker

#217 northwestwitch closed 3 years ago
0
Adds publication link

#216 moonso closed 3 years ago
0
Switch docs

#215 moonso closed 4 years ago
2
removing samples from db

#214 ninanorgren opened 4 years ago
2
Remove automatic PyPI build

#213 adrosenbaum closed 4 years ago
2
Release branch

#212 adrosenbaum closed 4 years ago
0
Allow gene list from file in coverage calculation

#211 adrosenbaum closed 4 years ago
2