Clinical-Genomics / scout

VCF visualization interface
https://clinical-genomics.github.io/scout
BSD 3-Clause "New" or "Revised" License
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Search subject ID from case list #4878

Closed eliottBo closed 1 week ago

eliottBo commented 1 week ago

Is your feature request related to a problem in the current program to new available technology or software? Please describe and add links/citations if appropriate.

"As we discussed today at the GMS logistics meeting, we would need the “subject ID” to be searchable from the Case list. Hope it can be easily implemented in Scout" (Request from Bianca Tesi iin Ticket #590195)

Describe the solution you'd like Be able to search a subject ID from the case list in Scout Describe alternatives you've considered

Additional context Add any other context or screenshots about the feature request here.

northwestwitch commented 1 week ago

I think it is already searchable. For instance if you have this case, you'll notice that the sample is named A00187. If you go to the cases of cust000 and search for A00187 or ACC8869A1 then the case should be returned.

Case individual looks like this in the database:

image

Or perhaps I misunderstood and sample ID is something else?

northwestwitch commented 1 week ago

Ok, speaking with @moahaegglund now I understood. There is an additional subject_id key in the individual dictionary, and THAT should be searchable.

dnil commented 1 week ago

Yes, it will be quite handy for finding matching WTS cases, but a new index will be required to avoid iteration through all individuals in all cases. Did you misplace your GitHub login btw @genecracker? 😜