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CoBrALab
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RABIES
fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/en/stable/
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After smoothing, the image is divided by the smoothed mask to correct…
#321
Gab-D-G
closed
1 year ago
0
The spatial smoothing step creates data point outside the brain mask
#320
Gab-D-G
closed
1 year ago
2
New guidelines for developpers
#319
Gab-D-G
closed
1 year ago
2
Docu updates
#318
Gab-D-G
closed
1 year ago
0
Flexible pybids
#317
Gab-D-G
closed
1 year ago
0
Id flagging
#316
Gab-D-G
closed
1 year ago
0
modelbuild.sh uses all threads available and does not follow --local_threads
#315
Gab-D-G
opened
1 year ago
0
The CLI --help is broken for confound correction
#314
Gab-D-G
closed
1 year ago
0
Add metadata to docker container
#313
gdevenyi
opened
1 year ago
0
Bump numpy from 1.20.1 to 1.22.0
#312
dependabot[bot]
closed
1 year ago
1
Bump scipy from 1.8.1 to 1.10.0
#311
dependabot[bot]
closed
1 year ago
1
String parsing error for aCompCor in version 0.4.7
#310
Gab-D-G
opened
1 year ago
1
Container todos
#309
gdevenyi
opened
1 year ago
2
Requiring specific versions in setup.py
#308
Gab-D-G
closed
1 year ago
0
ENHANCEMENT: Provide a complete functional pipeline usable with test data
#305
gdevenyi
opened
1 year ago
5
Updates
#304
Gab-D-G
closed
1 year ago
0
Coordinate nipype threads with ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS
#303
gdevenyi
opened
1 year ago
6
Big rewrite of Docker config as well as environment file
#301
gdevenyi
closed
1 year ago
3
Group_ICA error
#300
nmskhan
closed
1 year ago
2
Implement orthogonal polynomials (or better yet bsplines) for detrending
#297
gdevenyi
opened
1 year ago
0
testing data with Rabies
#296
nmskhan
closed
1 year ago
7
RABIES fails on test data
#294
benhibou
closed
1 year ago
2
1 bad file out of 50 subjects during preprocessing
#293
geowk
closed
1 year ago
4
Seed_list issue? Seed path doesn't exist?
#292
geowk
closed
1 year ago
4
Updates
#287
Gab-D-G
closed
1 year ago
0
--scan_list does not account for missing scans that are removed during confound correction
#285
Gab-D-G
closed
1 year ago
0
ROI_csv Analysis
#284
sxf-ux
closed
1 year ago
4
fastcommonspace should be default + add -subject and -session filter flags like in fmriprep
#283
grandjeanlab
closed
1 year ago
5
Default for image_scaling = global variance
#282
Francesca1990
closed
1 year ago
3
Consistency of temporal derivatives between FD and other metrics
#281
Gab-D-G
opened
1 year ago
0
Image orientation
#280
biancadepifanio
opened
1 year ago
1
EPI2ANAT (Functional EPI issue)
#279
sxf-ux
closed
1 year ago
3
Updates
#278
Gab-D-G
closed
1 year ago
0
Diagnosis updates
#277
Gab-D-G
closed
1 year ago
0
Pre-processing InhoCorrection Issue
#276
sxf-ux
closed
1 year ago
11
Issue with preprocessing step
#274
sxf-ux
closed
1 year ago
1
STC additions
#271
davidgruskin
closed
1 year ago
1
Diagnosis revision
#268
Gab-D-G
closed
1 year ago
0
Change the ROI_csv default to a proper .csv file.
#266
Gab-D-G
opened
1 year ago
0
When loading previously saved settings from a PKL file, properly log them to the runtime output
#265
gdevenyi
opened
1 year ago
2
SimpleITK ImageFileReader_Execute error
#264
archang
closed
1 year ago
18
Error during preprocessing: MattesMutualInformationImageToImageMetricv4(0x562240506630):
#262
KarisColyerPatel
opened
1 year ago
11
Update utils.py
#261
davidgruskin
closed
1 year ago
1
Ants update
#260
cedricBarre
closed
1 year ago
3
Permission issues
#256
KarisColyerPatel
closed
1 year ago
5
Include SIGMA template in RABIES for -rat preprocessing.
#255
grandjeanlab
opened
1 year ago
9
Switch back to mainline optimized_antsMultivariateTemplateConstruction
#254
gdevenyi
opened
1 year ago
0
Update submodules to include fixed metric gradient filter
#253
gdevenyi
closed
1 year ago
0
Updates
#252
Gab-D-G
closed
2 years ago
0
Coordinate nipype number of threads with ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS
#251
gdevenyi
opened
2 years ago
0
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