CogStack / MedCAT

Medical Concept Annotation Tool
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Question - local creation UMLS concepts #4

Closed richardbeare closed 4 years ago

richardbeare commented 4 years ago

Hi, I am running some experiments with medcat. I have a UMLS license and was wondering whether there are instructions for running the build process anywhere? I've noticed the colab on custom vocabs and perhaps the process for UMLS is the same?

Thanks

w-is-h commented 4 years ago

Hi @richardbeare building any cdb/vocab, no matter the source, is the same. You will only need to prepare the required CSV and do the same steps as in the colab. Also if interested, we are able to share the prebuilt models for UMLS given that you can provide some proof (see here).

richardbeare commented 4 years ago

Do you prefer screenshot via issue page?

On Tue, Jun 30, 2020 at 6:46 PM Zeljko notifications@github.com wrote:

Closed #4 https://github.com/CogStack/MedCAT/issues/4.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/CogStack/MedCAT/issues/4#event-3496628638, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAF6RINETQJSB5SXTS5TCELRZGQ47ANCNFSM4OLX67BQ .

w-is-h commented 4 years ago

A screenshot of this page is perfect.

richardbeare commented 4 years ago

How do you prefer it to be sent? In this issue?

On Tue, Jun 30, 2020 at 7:41 PM Zeljko notifications@github.com wrote:

A screenshot of this https://uts.nlm.nih.gov//uts.html#profile page is perfect.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/CogStack/MedCAT/issues/4#issuecomment-651684246, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAF6RIKQ6NUNA576PUKYTQTRZGXN3ANCNFSM4OLX67BQ .

w-is-h commented 4 years ago

Email is the best.

analyticalpicasso commented 2 years ago

Hi,

Is there a prebuild model for complete UML with ICD codes? I was able to download Snomed-CT and small UML model but couldn't find the link to download complete. Please let me know how to get it.