Open SomePersonSomeWhereInTheWorld opened 1 year ago
Does it work if you run
export CXXFLAGS="-std=c++11"
first?
No, ends with the same exact error.
Sorry, I don't have much else to suggest. odgi's the last tool installed in downloadPangenomeTools so even with this error, you should get a working Cactus at the end (for everything but odgi).
The binary and docker releases do contain odgi and should work on most systems, so you can try those: https://github.com/ComparativeGenomicsToolkit/cactus/releases/tag/v2.6.4
But if you really want to build odgi from source, you're probably best to deal directly with odgi's github. I'm happy to incorporate any fixes you find there if possible into Cactus.
Any fix for this? running:
build-tools/downloadPangenomeTools