ComparativeGenomicsToolkit / cactus

Official home of genome aligner based upon notion of Cactus graphs
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Indexing, coverage stats and TAF output options for cactus-hal2maf #1318

Closed glennhickey closed 6 months ago

glennhickey commented 6 months ago

This PR integrates some more taffy functionality, namely taffy index and taffy coverage, as optional postprocessing steps.

You can also output .taf and .taf.gz files by using the extension in the output filename.