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DASL-Lab / provoc

PROportions of Variants of Concern using counts, coverage, and a variant matrix.
https://dasl-lab.github.io/provoc/
MIT License
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More concise verbosity in `fuse()` #32

Closed DBecker7 closed 3 months ago

DBecker7 commented 4 months ago

Instead of a tiny fraction and a list of hundreds of mutations it should just show a message like:

XXX mutations in data, XXX mutations in definitions, XXX mutations in both.

The warning should be changed to only show up if less than 25% of the mutations in mutation_defs are used (it is irrelevant whether mutations in the data are used - there will always be a lot of those which are not used).

DBecker7 commented 4 months ago

Ideally, this would be saved as an attribute of the provoc object and then also displayed in the summary.provoc() function. This can be done later.