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DCollinsOwuor / Phylogeography-and-reassortment-patterns-of-human-influenza-A-viruses-in-sub-Saharan-Africa

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alluvium plot to count the number of virus imports and exports #1

Open Sikandar37 opened 9 months ago

Sikandar37 commented 9 months ago

Dear DCollins, I hope this message finds you well. I came across your preprint article "Phylogeography and reassortment patterns of human influenza A viruses in sub2 Saharan Africa". and found it a very useful article. I am currently learning phylogeographic analysis and I believe that your work would be a useful guide for me. I would like to know how you create an Alluvium plot and show the transition events. To my understanding, you use ML-dated tree topology annotated with location information. and plot it in R using ggplot,

can we create this using a Discrete phylogeographic tree generated by Beast?? I checked the repository thoroughly and couldn't get the script. Could you please share the script with me or guide me where to find it? I appreciate your time and contribution in this regard. Regards Sikandar

liamxg commented 4 months ago

Dear @Sikandar37, Do you find your answer?

Sikandar37 commented 4 months ago

Dear liam, Sorry i could not find the answer

liamxg commented 4 months ago

Dear @Sikandar37, Hope @DCollinsOwuor can reply you very soon.