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DKFZ-ODCF / AlignmentAndQCWorkflows

The DKFZ alignment workflow plugin originally developed at the eilslabs
https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/wiki
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WGBS Bug: coveragePlot.R #33

Open vinjana opened 5 years ago

vinjana commented 5 years ago

Bug in R-Script coveragePlot.R, finishes with error:

Error in axis(1, at = pretty(c(0, nrow(sampleOneCon[[i]]))), labels = paste(pretty(c(0,  :
  'at' and 'labels' lengths differ, 8 != 5
Execution halted
vinjana commented 5 years ago

M. Schlesner: @sjkv mentioned that the plotting script fails with too many open devices. One reason for this might be that it is run on all contigs in the genome, including the unplaced regions, decoy sequences, ... It is important that the genome coverage plot script runs only on 1-22, X, Y.