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DRL / blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
GNU General Public License v3.0
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Parsing Mapping file getting Killed #133

Closed migueldc1 closed 2 months ago

migueldc1 commented 2 months ago

Hello,

I'm being unable to parse any database with blobtools taxify. I am following some tutorial for the assembly of MAGs. I have these diamond runs against the uniref90 database, but whenever I try create the taxified output, the progress just gets killed:

blobtools taxify -f Diamond/PGL402__FKDN240174132-1A_22C5VCLT4_L8_1_uniref90.diamond -m uniref90.fasta.taxlist -s 0 -t 1 -o blobtools/PGL402__FKDN240174132-1A_22C5VCLT4_L8/PGL402__FKDN240174132-1A_22C5VCLT4_L8_blobtools
[+] Parsing Mapping file - uniref90.fasta.taxlist
Killed

The weird part is that I used to be able to run this script. How could I solve this issue or get some log file with more information about the error?

DRL commented 2 months ago

Hey @migueldc1

I would guess this has less to do with blobtools and more with your system. Something has killed the process.

Check your systemlog for why that happened.

cheers,

dom