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DReichLab / EIG

Eigen tools by Nick Patterson and Alkes Price lab
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(getpedgenos) all.filter.ped bad geno * #101

Open zishanw opened 8 months ago

zishanw commented 8 months ago

Hi there,

I got the error below after running convertf -p transfer.conf

image

Here is my parameter file

image

my .ped file looks like

image
bumblenick commented 8 months ago

I strongly suspect you have an allele "*" in your ped file. Please grep for this.

Nick

On Wed, Mar 13, 2024 at 8:52 PM Shan @.***> wrote:

Hi there,

I got the error below after running convertf -p transfer.conf image.png (view on web) https://github.com/DReichLab/EIG/assets/89725090/1f5e237e-0a39-4541-9165-9857248665a0

Here is my parameter file image.png (view on web) https://github.com/DReichLab/EIG/assets/89725090/fdfa7887-23a2-480f-a9db-91ff75ba80a9

my .ped file looks like image.png (view on web) https://github.com/DReichLab/EIG/assets/89725090/d6b8b9f1-f4e8-4e34-8c61-d9f177d8da2d

— Reply to this email directly, view it on GitHub https://github.com/DReichLab/EIG/issues/101, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEE77B6LNBAQRFWPNUBT7LLYYDYFJAVCNFSM6AAAAABEVFAF7SVHI2DSMVQWIX3LMV43ASLTON2WKOZSGE4DKMJXGAZDCNI . You are receiving this because you are subscribed to this thread.Message ID: @.***>