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DReichLab / EIG

Eigen tools by Nick Patterson and Alkes Price lab
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Error during make in Ubuntu #77

Closed curiosusJR closed 2 months ago

curiosusJR commented 2 years ago

Hi, I have downloaded the EIG v7.2.1 and installed the packages depends manually followed by readme. But there is a error message when I try to execute "make && make install".

Here is the error message:

cc   baseprog.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a  -lgsl -lopenblas -lm -lpthread -o baseprog
/home/linuxbrew/.linuxbrew/bin/ld: cannot find -lgsl
collect2: error: ld returned 1 exit status
make: *** [<builtin>: baseprog] Error 1

Then, I have tried this:

make CFLAGS="-I/n/app/openblas/0.2.19/include -I/n/app/gsl/2.3/include" LDFLAGS="-L/n/app/openblas/0.2.19/lib -L/n/app/gsl/2.3/lib/"

and this:

make CFLAGS="-I/usr/local/OpenBLAS/include -I/home/junru/GSL-4.0.0/include " LDFLAGS="-L/usr/local/OpenBLAS/lib -L/home/junru/GSL-4.0.0/build-x86/lib "

But the error still occurred. Please help me, what should I do.

Thank you very much.

MatthewMah commented 2 years ago

This error message says the linker cannot find the gsl library. You have to make sure the library is built and point the linker to it.