Apply quarto steps to render correct document

[ShahrukhP15]

• Use markdown headers and Quarto configuration so that a table of contents will be created when the document is rendered.
• Add correctly formatted inline bibtex references so that a nicely formatted reference list will be present at the end of the document.
• Edit the figure formatting so that Quarto: -automatically numbers them, -has a label for easy cross referencing, and -controls the figure sizes so the figures are not too big.
• Add a table description argument so that they are automatically numbered by Quarto and use cross referencing to link to the table if/when it is discussed in the text.
• Edit the narrative so it uses cross-referencing to refer to the figures and tables instead of having their reference hardcode the figure and table numbers.
• Replace any hard-coded values in the Quarto report narrative text with inline Quarto code, so that the text will be automatically updated with the correct value.
• Change the code chunk options so that no code is viewable in the rendered report, just the code outputs where needed (e.g., figures and tables).