Open meridiajane opened 13 hours ago
Update! I tried to run this through a singularity container as opposed to running it in the server environment directly, and it seems to be working. I'm leaving this open because I think it could be helpful to know what could be missing/incorrect in the environment.
Container obtained here:
singularity pull https://depot.galaxyproject.org/singularity/centrifuge:1.0.4.2--hdcf5f25_0
Hello, I'm running on Rocky Linux Version 9.0 with Python 3.9.10, and am trying to build an index using Centrifuge 1.0.4.2.
Code:
Expected output: creation of cf files
Actual output: Before manually adding centrifuge-build-bin:
After manually adding a bin with touch (to determine if that was the missing file):
I'm not entirely sure whether the bin file is supposed to be produced by the program (and is just not happening) or whether there's a step that I missed in preparation. I do know that the input files (seqid2taxid.map, taxonomy/nodes.dmp, taxonomy/names.dmp, and input-sequences.fna) are all present in the same directory as centrifuge-build.