Data2Dynamics / d2d

a modeling environment tailored to parameter estimation in dynamical systems
https://github.com/Data2Dynamics/d2d
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New: Chen2009 and Fujita2010 models added #123

Closed elbaraim closed 6 years ago

elbaraim commented 6 years ago

Chen2009: This model is taken from the paper "Input-output behavior of ErbB signaling pathways as revealed by a mass action model trained against dynamic data", by Chen et al., in 2009, PubMed, vol.5, no.239 (see https://www.ncbi.nlm.nih.gov/pubmed/19156131). I provide the optimal parameters in the publication (arLoadPars).

Fujita2010: This model is taken from the paper "Decoupling of Receptor and Downstream Signals in the Akt Pathway by Its Low-Pass Filter Characteristics" , by Fujita et. al., in 2010, ScienceSignaling, Vol.3 Issue 132 (see https://www.ncbi.nlm.nih.gov/pubmed/20664065). The optimal parameters in the publication are provided in the Results folder (commented line in Setup.m -> arLoadPars).