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DiltheyLab / HLA-LA

Fast HLA type inference from whole-genome data
GNU General Public License v3.0
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Error in htx_idx_push #91

Closed tessadgreen closed 1 year ago

tessadgreen commented 1 year ago

I'm getting an error that I'm not sure how to resolve--any ideas?

[E::hts_idx_push] Region 536887216..536887283 cannot be stored in a bai index. Try using a csi index with min_shift = 14, n_lvls >= 6
samtools index: failed to create index for "/n/groups/marks/projects/EDS/tessa/HLA-LA/tessa/tessa/remapped_with_a.bam": Numerical result out of range
terminate called after throwing an instance of 'std::runtime_error'
tessadgreen commented 1 year ago

I re-ran the job with more memory and it worked